PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00947.1.p
Common NameEUGRSUZ_C00947, LOC104436535
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 262aa    MW: 28671.7 Da    PI: 6.783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00947.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd +l  +++q+G+g +W t + + g++R++k+c++rw++yl
  Eucgr.C00947.1.p 14 RGAWSPEEDAILMSYIQQHGSGnNWITLPVRAGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP

2Myb_DNA-binding44.43.9e-1468111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg +++eEd  ++ +   +G++ W++I+++++ gRt++++k++w++
  Eucgr.C00947.1.p  68 RGGFSEEEDNAILTLYSVFGSR-WSLISSRLP-GRTDNDVKNHWNT 111
                       788*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.323962IPR017930Myb domain
SuperFamilySSF466891.17E-2611109IPR009057Homeodomain-like
SMARTSM007177.2E-101364IPR001005SANT/Myb domain
PfamPF002492.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-231569IPR009057Homeodomain-like
CDDcd001671.14E-71662No hitNo description
PROSITE profilePS5129423.56163117IPR017930Myb domain
SMARTSM007171.9E-1467115IPR001005SANT/Myb domain
PfamPF002498.3E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2370116IPR009057Homeodomain-like
CDDcd001671.80E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGAWSPE EDAILMSYIQ QHGSGNNWIT LPVRAGLKRC GKSCRLRWLN  60
YLRPDIKRGG FSEEEDNAIL TLYSVFGSRW SLISSRLPGR TDNDVKNHWN TKLKKKHLSA  120
GKAACLRSDK NRNLGGPAVP DVPKLETHDD HIVDSSSYCL YNNSFSSLPQ LHASPGHQEH  180
SSFDHQDQKA PSFVAPTVMA SSDFGTGGNN FGAASSTSPQ EVSSLSSASS SLAFPGNDEA  240
NAEEEQIFLD FDYDILNSFW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00947.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047644.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A059CMI70.0A0A059CMI7_EUCGR; Uncharacterized protein
STRINGPOPTR_0006s25060.14e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-65myb domain protein 87